A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes

2016
Authors
Pasquali, Matias
Beyer, Marco

Hoffmann, Lucien
Pallez-Barthel, Marine
Piec, Jonathan
Logrieco, Antonio
Moretti, Antonio
Audenaert, Kris
Vanheule, Adriaan
Balmas, Virgilio
Migheli, Quirico

Scherm, Barbara
Basler, Ryan

Boutigny, Anne-Laure
Chrpova, Jana
Czembor, Elzbieta

Gagkaeva, Tatiana
Gonzalez-Jaen, Maria

Marin, Patricia
Hofgaard, Ingerd S.
Koycu, Nagehan D.
Lević, Jelena
Stanković, Slavica

Miedaner, Thomas

Mueller, Marina E. H.
Munaut, Francoise
Scauflaire, Jonathan
Parikka, Paivi
Thrane, Ulf

Uhlig, Silvio
Yli-Mattila, Tapani

Vogelgsang, Susanne
Article (Published version)
Metadata
Show full item recordAbstract
Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous... crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.
Keywords:
acetyldeoxynivalenol / chemotype / database / Fusarium / genotype / mycotoxin / nivalenol / trichotheceneSource:
Frontiers in Microbiology, 2016, 7Publisher:
- Frontiers Media Sa, Lausanne
Projects:
- Ministere de l'Agriculture, de la Viticulture et de la Protection des Consommateurs-Administration d
- M.I.U.R. Project AGROGEN (Laboratory of GENomics for traits of AGROnomic importance in durum wheat: Identification of useful genes, functional analysis and assisted selection by biological markers for the development of the national seed chain) - 602/Ric
- Felix Thornley Cobbold Trust
- John Oldacre Foundation
- Ministry of Agriculture of the Czech Republic - 800415
- Spanish Ministry MINECO - AGL201.4-53928-C2-2-R
- Ministry of Agriculture and Food, Norway
- Federal Ministry of Education and Research (BMBF) (GABI-KANADA), Bonn - FKZ 0313711A
- German Academic Exchange Service (DAAD), Bonn - A/06/92183
- Finnish Ministry of Agriculture and Forestry
- Direction Generale de l'Agriculture, Direction de la Recherche - D31-3159
- Direction Generale de l'Agriculture, Direction de la Recherche - D31-1162
- Direction Generale de l'Agriculture, Direction de la Recherche - D31-7055
- P.O.R. SARDEGNA F.S.
- Danish Directorate for Food, Fisheries and Agri Business - FFS05-3
- Academy of Finland - 126917
- Academy of Finland - 131957
- Academy of Finland - 250904
- Academy of Finland - 252162
- Academy of Finland - 267188
- Academy of Finland - 266984
- Olvi Foundation
- Turku University Foundation
- CIMO travel grant
- Nordic network project New Emerging Mycotoxins and Secondary Metabolites in Toxigenic Fungi of Northern Europe - Nordic Research Board - 090014
DOI: 10.3389/fmicb.2016.00406
ISSN: 1664-302X
PubMed: 27092107
WoS: 000373502900002
Scopus: 2-s2.0-84966322357
Collections
Institution
MRIZPTY - JOUR AU - Pasquali, Matias AU - Beyer, Marco AU - Hoffmann, Lucien AU - Pallez-Barthel, Marine AU - Piec, Jonathan AU - Logrieco, Antonio AU - Moretti, Antonio AU - Audenaert, Kris AU - Vanheule, Adriaan AU - Balmas, Virgilio AU - Migheli, Quirico AU - Scherm, Barbara AU - Basler, Ryan AU - Boutigny, Anne-Laure AU - Chrpova, Jana AU - Czembor, Elzbieta AU - Gagkaeva, Tatiana AU - Gonzalez-Jaen, Maria AU - Marin, Patricia AU - Hofgaard, Ingerd S. AU - Koycu, Nagehan D. AU - Lević, Jelena AU - Stanković, Slavica AU - Miedaner, Thomas AU - Mueller, Marina E. H. AU - Munaut, Francoise AU - Scauflaire, Jonathan AU - Parikka, Paivi AU - Thrane, Ulf AU - Uhlig, Silvio AU - Yli-Mattila, Tapani AU - Vogelgsang, Susanne PY - 2016 UR - http://rik.mrizp.rs/handle/123456789/655 AB - Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified. PB - Frontiers Media Sa, Lausanne T2 - Frontiers in Microbiology T1 - A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes VL - 7 DO - 10.3389/fmicb.2016.00406 ER -
@article{ author = "Pasquali, Matias and Beyer, Marco and Hoffmann, Lucien and Pallez-Barthel, Marine and Piec, Jonathan and Logrieco, Antonio and Moretti, Antonio and Audenaert, Kris and Vanheule, Adriaan and Balmas, Virgilio and Migheli, Quirico and Scherm, Barbara and Basler, Ryan and Boutigny, Anne-Laure and Chrpova, Jana and Czembor, Elzbieta and Gagkaeva, Tatiana and Gonzalez-Jaen, Maria and Marin, Patricia and Hofgaard, Ingerd S. and Koycu, Nagehan D. and Lević, Jelena and Stanković, Slavica and Miedaner, Thomas and Mueller, Marina E. H. and Munaut, Francoise and Scauflaire, Jonathan and Parikka, Paivi and Thrane, Ulf and Uhlig, Silvio and Yli-Mattila, Tapani and Vogelgsang, Susanne", year = "2016", url = "http://rik.mrizp.rs/handle/123456789/655", abstract = "Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.", publisher = "Frontiers Media Sa, Lausanne", journal = "Frontiers in Microbiology", title = "A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes", volume = "7", doi = "10.3389/fmicb.2016.00406" }
Pasquali M, Beyer M, Hoffmann L, Pallez-Barthel M, Piec J, Logrieco A, Moretti A, Audenaert K, Vanheule A, Balmas V, Migheli Q, Scherm B, Basler R, Boutigny A, Chrpova J, Czembor E, Gagkaeva T, Gonzalez-Jaen M, Marin P, Hofgaard IS, Koycu ND, Lević J, Stanković S, Miedaner T, Mueller MEH, Munaut F, Scauflaire J, Parikka P, Thrane U, Uhlig S, Yli-Mattila T, Vogelgsang S. A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes. Frontiers in Microbiology. 2016;7
Pasquali, M., Beyer, M., Hoffmann, L., Pallez-Barthel, M., Piec, J., Logrieco, A., Moretti, A., Audenaert, K., Vanheule, A., Balmas, V., Migheli, Q., Scherm, B., Basler, R., Boutigny, A., Chrpova, J., Czembor, E., Gagkaeva, T., Gonzalez-Jaen, M., Marin, P., Hofgaard, I. S., Koycu, N. D., Lević, J., Stanković, S., Miedaner, T., Mueller, M. E. H., Munaut, F., Scauflaire, J., Parikka, P., Thrane, U., Uhlig, S., Yli-Mattila, T.,& Vogelgsang, S. (2016). A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes. Frontiers in MicrobiologyFrontiers Media Sa, Lausanne., 7. https://doi.org/10.3389/fmicb.2016.00406
Pasquali Matias, Beyer Marco, Hoffmann Lucien, Pallez-Barthel Marine, Piec Jonathan, Logrieco Antonio, Moretti Antonio, Audenaert Kris, Vanheule Adriaan, Balmas Virgilio, Migheli Quirico, Scherm Barbara, Basler Ryan, Boutigny Anne-Laure, Chrpova Jana, Czembor Elzbieta, Gagkaeva Tatiana, Gonzalez-Jaen Maria, Marin Patricia, Hofgaard Ingerd S., Koycu Nagehan D., Lević Jelena, Stanković Slavica, Miedaner Thomas, Mueller Marina E. H., Munaut Francoise, Scauflaire Jonathan, Parikka Paivi, Thrane Ulf, Uhlig Silvio, Yli-Mattila Tapani, Vogelgsang Susanne, "A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes" 7 (2016), https://doi.org/10.3389/fmicb.2016.00406 .