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A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes

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2016
653.pdf (2.438Mb)
Authors
Pasquali, Matias
Beyer, Marco
Hoffmann, Lucien
Pallez-Barthel, Marine
Piec, Jonathan
Logrieco, Antonio
Moretti, Antonio
Audenaert, Kris
Vanheule, Adriaan
Balmas, Virgilio
Migheli, Quirico
Scherm, Barbara
Basler, Ryan
Boutigny, Anne-Laure
Chrpova, Jana
Czembor, Elzbieta
Gagkaeva, Tatiana
Gonzalez-Jaen, Maria
Marin, Patricia
Hofgaard, Ingerd S.
Koycu, Nagehan D.
Lević, Jelena
Stanković, Slavica
Miedaner, Thomas
Mueller, Marina E. H.
Munaut, Francoise
Scauflaire, Jonathan
Parikka, Paivi
Thrane, Ulf
Uhlig, Silvio
Yli-Mattila, Tapani
Vogelgsang, Susanne
Article (Published version)
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Abstract
Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous... crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.

Keywords:
acetyldeoxynivalenol / chemotype / database / Fusarium / genotype / mycotoxin / nivalenol / trichothecene
Source:
Frontiers in Microbiology, 2016, 7
Publisher:
  • Frontiers Media Sa, Lausanne
Projects:
  • Ministere de l'Agriculture, de la Viticulture et de la Protection des Consommateurs-Administration d
  • M.I.U.R. Project AGROGEN (Laboratory of GENomics for traits of AGROnomic importance in durum wheat: Identification of useful genes, functional analysis and assisted selection by biological markers for the development of the national seed chain) - 602/Ric
  • Felix Thornley Cobbold Trust
  • John Oldacre Foundation
  • Ministry of Agriculture of the Czech Republic - 800415
  • Spanish Ministry MINECO - AGL201.4-53928-C2-2-R
  • Ministry of Agriculture and Food, Norway
  • Federal Ministry of Education and Research (BMBF) (GABI-KANADA), Bonn - FKZ 0313711A
  • German Academic Exchange Service (DAAD), Bonn - A/06/92183
  • Finnish Ministry of Agriculture and Forestry
  • Direction Generale de l'Agriculture, Direction de la Recherche - D31-3159
  • Direction Generale de l'Agriculture, Direction de la Recherche - D31-1162
  • Direction Generale de l'Agriculture, Direction de la Recherche - D31-7055
  • P.O.R. SARDEGNA F.S.
  • Danish Directorate for Food, Fisheries and Agri Business - FFS05-3
  • Academy of Finland - 126917
  • Academy of Finland - 131957
  • Academy of Finland - 250904
  • Academy of Finland - 252162
  • Academy of Finland - 267188
  • Academy of Finland - 266984
  • Olvi Foundation
  • Turku University Foundation
  • CIMO travel grant
  • Nordic network project New Emerging Mycotoxins and Secondary Metabolites in Toxigenic Fungi of Northern Europe - Nordic Research Board - 090014

DOI: 10.3389/fmicb.2016.00406

ISSN: 1664-302X

PubMed: 27092107

WoS: 000373502900002

Scopus: 2-s2.0-84966322357
[ Google Scholar ]
70
64
URI
http://rik.mrizp.rs/handle/123456789/655
Collections
  • Радови истраживача / Researchers' publications
Institution
MRIZP
TY  - JOUR
AU  - Pasquali, Matias
AU  - Beyer, Marco
AU  - Hoffmann, Lucien
AU  - Pallez-Barthel, Marine
AU  - Piec, Jonathan
AU  - Logrieco, Antonio
AU  - Moretti, Antonio
AU  - Audenaert, Kris
AU  - Vanheule, Adriaan
AU  - Balmas, Virgilio
AU  - Migheli, Quirico
AU  - Scherm, Barbara
AU  - Basler, Ryan
AU  - Boutigny, Anne-Laure
AU  - Chrpova, Jana
AU  - Czembor, Elzbieta
AU  - Gagkaeva, Tatiana
AU  - Gonzalez-Jaen, Maria
AU  - Marin, Patricia
AU  - Hofgaard, Ingerd S.
AU  - Koycu, Nagehan D.
AU  - Lević, Jelena
AU  - Stanković, Slavica
AU  - Miedaner, Thomas
AU  - Mueller, Marina E. H.
AU  - Munaut, Francoise
AU  - Scauflaire, Jonathan
AU  - Parikka, Paivi
AU  - Thrane, Ulf
AU  - Uhlig, Silvio
AU  - Yli-Mattila, Tapani
AU  - Vogelgsang, Susanne
PY  - 2016
UR  - http://rik.mrizp.rs/handle/123456789/655
AB  - Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.
PB  - Frontiers Media Sa, Lausanne
T2  - Frontiers in Microbiology
T1  - A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes
VL  - 7
DO  - 10.3389/fmicb.2016.00406
ER  - 
@article{
author = "Pasquali, Matias and Beyer, Marco and Hoffmann, Lucien and Pallez-Barthel, Marine and Piec, Jonathan and Logrieco, Antonio and Moretti, Antonio and Audenaert, Kris and Vanheule, Adriaan and Balmas, Virgilio and Migheli, Quirico and Scherm, Barbara and Basler, Ryan and Boutigny, Anne-Laure and Chrpova, Jana and Czembor, Elzbieta and Gagkaeva, Tatiana and Gonzalez-Jaen, Maria and Marin, Patricia and Hofgaard, Ingerd S. and Koycu, Nagehan D. and Lević, Jelena and Stanković, Slavica and Miedaner, Thomas and Mueller, Marina E. H. and Munaut, Francoise and Scauflaire, Jonathan and Parikka, Paivi and Thrane, Ulf and Uhlig, Silvio and Yli-Mattila, Tapani and Vogelgsang, Susanne",
year = "2016",
url = "http://rik.mrizp.rs/handle/123456789/655",
abstract = "Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.",
publisher = "Frontiers Media Sa, Lausanne",
journal = "Frontiers in Microbiology",
title = "A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes",
volume = "7",
doi = "10.3389/fmicb.2016.00406"
}
Pasquali M, Beyer M, Hoffmann L, Pallez-Barthel M, Piec J, Logrieco A, Moretti A, Audenaert K, Vanheule A, Balmas V, Migheli Q, Scherm B, Basler R, Boutigny A, Chrpova J, Czembor E, Gagkaeva T, Gonzalez-Jaen M, Marin P, Hofgaard IS, Koycu ND, Lević J, Stanković S, Miedaner T, Mueller MEH, Munaut F, Scauflaire J, Parikka P, Thrane U, Uhlig S, Yli-Mattila T, Vogelgsang S. A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes. Frontiers in Microbiology. 2016;7
Pasquali, M., Beyer, M., Hoffmann, L., Pallez-Barthel, M., Piec, J., Logrieco, A., Moretti, A., Audenaert, K., Vanheule, A., Balmas, V., Migheli, Q., Scherm, B., Basler, R., Boutigny, A., Chrpova, J., Czembor, E., Gagkaeva, T., Gonzalez-Jaen, M., Marin, P., Hofgaard, I. S., Koycu, N. D., Lević, J., Stanković, S., Miedaner, T., Mueller, M. E. H., Munaut, F., Scauflaire, J., Parikka, P., Thrane, U., Uhlig, S., Yli-Mattila, T.,& Vogelgsang, S. (2016). A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes.
Frontiers in MicrobiologyFrontiers Media Sa, Lausanne., 7.
https://doi.org/10.3389/fmicb.2016.00406
Pasquali Matias, Beyer Marco, Hoffmann Lucien, Pallez-Barthel Marine, Piec Jonathan, Logrieco Antonio, Moretti Antonio, Audenaert Kris, Vanheule Adriaan, Balmas Virgilio, Migheli Quirico, Scherm Barbara, Basler Ryan, Boutigny Anne-Laure, Chrpova Jana, Czembor Elzbieta, Gagkaeva Tatiana, Gonzalez-Jaen Maria, Marin Patricia, Hofgaard Ingerd S., Koycu Nagehan D., Lević Jelena, Stanković Slavica, Miedaner Thomas, Mueller Marina E. H., Munaut Francoise, Scauflaire Jonathan, Parikka Paivi, Thrane Ulf, Uhlig Silvio, Yli-Mattila Tapani, Vogelgsang Susanne, "A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes" 7 (2016),
https://doi.org/10.3389/fmicb.2016.00406 .

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