Chilling induced stress sRNAs in maize plants in early stages of development.
Конференцијски прилог (Објављена верзија)
Метаподаци
Приказ свих података о документуАпстракт
Small non-coding RNAs (sRNAs) have an important role in regulating plant gene expression,
both in developmental processes and stress responses, through RNA interference or silencing.
sRNAs respond to environmental stressors in manners dependant on the type of stress, tissue
and genetic background. Herein, their role in chilling stress response is examined in young maize
seedlings (Zea mays L.) of two inbred lines of contrasting chilling tolerance, using high-throughput
sequencing methods. Understanding this response is critical since one of the most promising
strategies of avoiding maize yield loss due to climate change is earlier sowing, during periods
of suboptimal temperatures. Sterilized seeds of the two lines, marked as LT (tolerant), and LS
(sensitive), were germinated in the dark for five days (optimal conditions), after which the 5-d
old seedlings were exposed to chilling conditions for 24h (temperature: 10/8 °C; photoperiod:
12/12h). Samples for RNA isolation were ta...ken after 6h and 24h of treatment. After the cDNA
library preparations were finished, single-end 50 bp sequencing was performed (Illumina® Novaseq 6000). sRNAseq analysis was performed using a custom pipeline that included quality control, mapping, known miRNA alignment and novel miRNA prediction and quantification. This is an ongoing research and a selection of results will be presented. On average 81% of sRNA reads were succesfully mapped and belong to the class of microRNAs (miRNAs). Some of the sRNAs appear to be differentialy regulated depending on the genotype and the chilling conditions, but more research is needed to verify their potential role in this process.
Кључне речи:
maize / abiotic stress / chilling / ngs / srnasИзвор:
Book of Abstracts: 4th International Conference on Plant Biology and 23rd SPPS Meeting, 6-8 October 2022, Belgrade, 2022Издавач:
- Belgrade : Serbian Plant Physiology Society
Финансирање / пројекти:
- Министарство науке, технолошког развоја и иновација Републике Србије, институционално финансирање - 200040 (Институт за кукуруз 'Земун поље', Београд-Земун) (RS-MESTD-inst-2020-200040)
Институција/група
MRIZPTY - CONF AU - Božić, Manja AU - Ignjatović-Micić, Dragana AU - Vančetović, Jelena AU - Delić, Nenad AU - Nikolić, Ana PY - 2022 UR - http://rik.mrizp.rs/handle/123456789/1152 AB - Small non-coding RNAs (sRNAs) have an important role in regulating plant gene expression, both in developmental processes and stress responses, through RNA interference or silencing. sRNAs respond to environmental stressors in manners dependant on the type of stress, tissue and genetic background. Herein, their role in chilling stress response is examined in young maize seedlings (Zea mays L.) of two inbred lines of contrasting chilling tolerance, using high-throughput sequencing methods. Understanding this response is critical since one of the most promising strategies of avoiding maize yield loss due to climate change is earlier sowing, during periods of suboptimal temperatures. Sterilized seeds of the two lines, marked as LT (tolerant), and LS (sensitive), were germinated in the dark for five days (optimal conditions), after which the 5-d old seedlings were exposed to chilling conditions for 24h (temperature: 10/8 °C; photoperiod: 12/12h). Samples for RNA isolation were taken after 6h and 24h of treatment. After the cDNA library preparations were finished, single-end 50 bp sequencing was performed (Illumina® Novaseq 6000). sRNAseq analysis was performed using a custom pipeline that included quality control, mapping, known miRNA alignment and novel miRNA prediction and quantification. This is an ongoing research and a selection of results will be presented. On average 81% of sRNA reads were succesfully mapped and belong to the class of microRNAs (miRNAs). Some of the sRNAs appear to be differentialy regulated depending on the genotype and the chilling conditions, but more research is needed to verify their potential role in this process. PB - Belgrade : Serbian Plant Physiology Society C3 - Book of Abstracts: 4th International Conference on Plant Biology and 23rd SPPS Meeting, 6-8 October 2022, Belgrade T1 - Chilling induced stress sRNAs in maize plants in early stages of development. UR - https://hdl.handle.net/21.15107/rcub_rik_1152 ER -
@conference{ author = "Božić, Manja and Ignjatović-Micić, Dragana and Vančetović, Jelena and Delić, Nenad and Nikolić, Ana", year = "2022", abstract = "Small non-coding RNAs (sRNAs) have an important role in regulating plant gene expression, both in developmental processes and stress responses, through RNA interference or silencing. sRNAs respond to environmental stressors in manners dependant on the type of stress, tissue and genetic background. Herein, their role in chilling stress response is examined in young maize seedlings (Zea mays L.) of two inbred lines of contrasting chilling tolerance, using high-throughput sequencing methods. Understanding this response is critical since one of the most promising strategies of avoiding maize yield loss due to climate change is earlier sowing, during periods of suboptimal temperatures. Sterilized seeds of the two lines, marked as LT (tolerant), and LS (sensitive), were germinated in the dark for five days (optimal conditions), after which the 5-d old seedlings were exposed to chilling conditions for 24h (temperature: 10/8 °C; photoperiod: 12/12h). Samples for RNA isolation were taken after 6h and 24h of treatment. After the cDNA library preparations were finished, single-end 50 bp sequencing was performed (Illumina® Novaseq 6000). sRNAseq analysis was performed using a custom pipeline that included quality control, mapping, known miRNA alignment and novel miRNA prediction and quantification. This is an ongoing research and a selection of results will be presented. On average 81% of sRNA reads were succesfully mapped and belong to the class of microRNAs (miRNAs). Some of the sRNAs appear to be differentialy regulated depending on the genotype and the chilling conditions, but more research is needed to verify their potential role in this process.", publisher = "Belgrade : Serbian Plant Physiology Society", journal = "Book of Abstracts: 4th International Conference on Plant Biology and 23rd SPPS Meeting, 6-8 October 2022, Belgrade", title = "Chilling induced stress sRNAs in maize plants in early stages of development.", url = "https://hdl.handle.net/21.15107/rcub_rik_1152" }
Božić, M., Ignjatović-Micić, D., Vančetović, J., Delić, N.,& Nikolić, A.. (2022). Chilling induced stress sRNAs in maize plants in early stages of development.. in Book of Abstracts: 4th International Conference on Plant Biology and 23rd SPPS Meeting, 6-8 October 2022, Belgrade Belgrade : Serbian Plant Physiology Society.. https://hdl.handle.net/21.15107/rcub_rik_1152
Božić M, Ignjatović-Micić D, Vančetović J, Delić N, Nikolić A. Chilling induced stress sRNAs in maize plants in early stages of development.. in Book of Abstracts: 4th International Conference on Plant Biology and 23rd SPPS Meeting, 6-8 October 2022, Belgrade. 2022;. https://hdl.handle.net/21.15107/rcub_rik_1152 .
Božić, Manja, Ignjatović-Micić, Dragana, Vančetović, Jelena, Delić, Nenad, Nikolić, Ana, "Chilling induced stress sRNAs in maize plants in early stages of development." in Book of Abstracts: 4th International Conference on Plant Biology and 23rd SPPS Meeting, 6-8 October 2022, Belgrade (2022), https://hdl.handle.net/21.15107/rcub_rik_1152 .