Scherm, Barbara

TY  - JOUR
AU  - Pasquali, Matias
AU  - Beyer, Marco
AU  - Hoffmann, Lucien
AU  - Pallez-Barthel, Marine
AU  - Piec, Jonathan
AU  - Logrieco, Antonio
AU  - Moretti, Antonio
AU  - Audenaert, Kris
AU  - Vanheule, Adriaan
AU  - Balmas, Virgilio
AU  - Migheli, Quirico
AU  - Scherm, Barbara
AU  - Basler, Ryan
AU  - Boutigny, Anne-Laure
AU  - Chrpova, Jana
AU  - Czembor, Elzbieta
AU  - Gagkaeva, Tatiana
AU  - Gonzalez-Jaen, Maria
AU  - Marin, Patricia
AU  - Hofgaard, Ingerd S.
AU  - Koycu, Nagehan D.
AU  - Lević, Jelena
AU  - Stanković, Slavica
AU  - Miedaner, Thomas
AU  - Mueller, Marina E. H.
AU  - Munaut, Francoise
AU  - Scauflaire, Jonathan
AU  - Parikka, Paivi
AU  - Thrane, Ulf
AU  - Uhlig, Silvio
AU  - Yli-Mattila, Tapani
AU  - Vogelgsang, Susanne
PY  - 2016
UR  - http://rik.mrizp.rs/handle/123456789/655
AB  - Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.
PB  - Frontiers Media Sa, Lausanne
T2  - Frontiers in Microbiology
T1  - A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes
VL  - 7
DO  - 10.3389/fmicb.2016.00406
ER  - 

@article{
author = "Pasquali, Matias and Beyer, Marco and Hoffmann, Lucien and Pallez-Barthel, Marine and Piec, Jonathan and Logrieco, Antonio and Moretti, Antonio and Audenaert, Kris and Vanheule, Adriaan and Balmas, Virgilio and Migheli, Quirico and Scherm, Barbara and Basler, Ryan and Boutigny, Anne-Laure and Chrpova, Jana and Czembor, Elzbieta and Gagkaeva, Tatiana and Gonzalez-Jaen, Maria and Marin, Patricia and Hofgaard, Ingerd S. and Koycu, Nagehan D. and Lević, Jelena and Stanković, Slavica and Miedaner, Thomas and Mueller, Marina E. H. and Munaut, Francoise and Scauflaire, Jonathan and Parikka, Paivi and Thrane, Ulf and Uhlig, Silvio and Yli-Mattila, Tapani and Vogelgsang, Susanne",
year = "2016",
url = "http://rik.mrizp.rs/handle/123456789/655",
abstract = "Fusarium species, particularly Fusarium graminearum and F culmorum, are the main cause of trichothecene type B contamination in cereals. Data on the distribution of Fusarium trichothecene genotypes in cereals in Europe are scattered in time and space. Furthermore, a common core set of related variables (sampling method, host cultivar, previous crop, etc.) that would allow more effective analysis of factors influencing the spatial and temporal population distribution, is lacking. Consequently, based on the available data, it is difficult to identify factors influencing chemotype distribution and spread at the European level. Here we describe the results of a collaborative integrated work which aims (1) to characterize the trichothecene genotypes of strains from three Fusarium species, collected over the period 2000-2013 and (2) to enhance the standardization of epidemiological data collection. Information on host plant, country of origin, sampling location, year of sampling and previous crop of 1147 F graminearurn, 479 F culmorum, and 3 F cortaderiae strains obtained from 17 European countries was compiled and a map of trichothecene type B genotype distribution was plotted for each species. All information on the strains was collected in a freely accessible and updatable database (www.catalogueeu.luxmcc.lu), which will serve as a starting point for epidemiological analysis of potential spatial and temporal trichothecene genotype shifts in Europe. The analysis of the currently available European dataset showed that in F. grarninearum, the predominant genotype was 15-acetyldeoxynivalenol (15-ADON) (82.9%), followed by 3-acetyldeoxynivalenol (3-ADON) (13.6%), and nivalenol (NIV) (3.5%). In F culmorum, the prevalent genotype was 3-ADON (59.9%), while the NIV genotype accounted for the remaining 40.1%. Both, geographical and temporal patterns of trichothecene genotypes distribution were identified.",
publisher = "Frontiers Media Sa, Lausanne",
journal = "Frontiers in Microbiology",
title = "A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes",
volume = "7",
doi = "10.3389/fmicb.2016.00406"
}

Pasquali, M., Beyer, M., Hoffmann, L., Pallez-Barthel, M., Piec, J., Logrieco, A., Moretti, A., Audenaert, K., Vanheule, A., Balmas, V., Migheli, Q., Scherm, B., Basler, R., Boutigny, A., Chrpova, J., Czembor, E., Gagkaeva, T., Gonzalez-Jaen, M., Marin, P., Hofgaard, I. S., Koycu, N. D., Lević, J., Stanković, S., Miedaner, T., Mueller, M. E. H., Munaut, F., Scauflaire, J., Parikka, P., Thrane, U., Uhlig, S., Yli-Mattila, T.,& Vogelgsang, S. (2016). A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes.
Frontiers in MicrobiologyFrontiers Media Sa, Lausanne., 7.
https://doi.org/10.3389/fmicb.2016.00406

Pasquali M, Beyer M, Hoffmann L, Pallez-Barthel M, Piec J, Logrieco A, Moretti A, Audenaert K, Vanheule A, Balmas V, Migheli Q, Scherm B, Basler R, Boutigny A, Chrpova J, Czembor E, Gagkaeva T, Gonzalez-Jaen M, Marin P, Hofgaard IS, Koycu ND, Lević J, Stanković S, Miedaner T, Mueller MEH, Munaut F, Scauflaire J, Parikka P, Thrane U, Uhlig S, Yli-Mattila T, Vogelgsang S. A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes. Frontiers in Microbiology. 2016;7

Pasquali Matias, Beyer Marco, Hoffmann Lucien, Pallez-Barthel Marine, Piec Jonathan, Logrieco Antonio, Moretti Antonio, Audenaert Kris, Vanheule Adriaan, Balmas Virgilio, Migheli Quirico, Scherm Barbara, Basler Ryan, Boutigny Anne-Laure, Chrpova Jana, Czembor Elzbieta, Gagkaeva Tatiana, Gonzalez-Jaen Maria, Marin Patricia, Hofgaard Ingerd S., Koycu Nagehan D., Lević Jelena, Stanković Slavica, Miedaner Thomas, Mueller Marina E. H., Munaut Francoise, Scauflaire Jonathan, Parikka Paivi, Thrane Ulf, Uhlig Silvio, Yli-Mattila Tapani, Vogelgsang Susanne, "A European Database of Fusarium graminearum and F-culmorum Trichothecene Genotypes" 7 (2016),
https://doi.org/10.3389/fmicb.2016.00406 .